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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OQ946686.1 nt Coffea arabica plastid, complete ge... 155008 bp Coffea arabica QL-PLN-00-007 571 bp View
OQ946688.1 nt Coffea arabica x Coffea canephora p... 155124 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946690.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946691.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946692.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946693.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946694.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946696.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946697.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946698.1 nt Coffea liberica var. dewevrei plast... 154814 bp Coffea liberica var. dewevrei QL-PLN-00-007 571 bp View
OQ946699.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946700.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946701.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946702.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946703.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946704.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946705.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946706.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946707.1 nt Coffea canephora plastid, complete ... 154952 bp Coffea canephora QL-PLN-00-007 571 bp View
OQ946708.1 nt Coffea canephora plastid, complete ... 154959 bp Coffea canephora QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.