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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP328232.1 nt Themeda triandra voucher T512_Jobso... 138752 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328233.1 nt Themeda triandra voucher T518_Jobso... 138749 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328234.1 nt Themeda triandra voucher T519_Jobso... 138878 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328235.1 nt Themeda triandra voucher T520_Jobso... 138872 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328236.1 nt Themeda triandra voucher T563_Ajduk... 138788 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328237.1 nt Themeda triandra voucher T564_Ajduk... 138831 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328238.1 nt Themeda triandra voucher T566_Murdo... 138782 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328239.1 nt Themeda triandra voucher T570_Murdo... 138843 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328240.1 nt Themeda triandra voucher T571_Murdo... 138786 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328241.1 nt Themeda triandra voucher T573_Murdo... 138837 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328242.1 nt Themeda triandra voucher T574_Murdo... 138849 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328243.1 nt Themeda triandra voucher T575_Murdo... 138845 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328244.1 nt Themeda triandra voucher T577_Murdo... 138849 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328245.1 nt Themeda triandra voucher T580_Jobso... 138907 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328246.1 nt Themeda triandra voucher TtPh16-4 c... 138855 bp Themeda triandra QL-PLN-00-007 525 bp View
OP572359.1 nt Arundo donax chloroplast, complete ... 137153 bp Arundo donax QL-PLN-00-007 621 bp View
OP580977.1 nt Indocalamus longiauritus chloroplas... 139697 bp Indocalamus longiauritus QL-PLN-00-007 614 bp View
OP580979.1 nt Trema angustifolia chloroplast, par... 156742 bp Trema angustifolia QL-PLN-00-007 589 bp View
OP580997.1 nt Trema cannabinum var. dielsianum ch... 157795 bp Trema cannabina var. dielsianum QL-PLN-00-007 595 bp View
OP580998.1 nt Paulownia kawakamii chloroplast, pa... 154611 bp Paulownia kawakamii QL-PLN-00-007 566 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.