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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP328191.1 nt Themeda triandra voucher T115_Jobso... 138859 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328192.1 nt Themeda quadrivalvis voucher T119_J... 138768 bp Themeda quadrivalvis QL-PLN-00-007 526 bp View
OP328193.1 nt Themeda triandra voucher T126_Jobso... 138868 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328194.1 nt Themeda arguens voucher T127_Jobson... 138930 bp Themeda arguens QL-PLN-00-007 525 bp View
OP328195.1 nt Themeda avenacea voucher T130_Jobso... 139393 bp Themeda avenacea QL-PLN-00-007 525 bp View
OP328196.1 nt Themeda quadrivalvis voucher T134_J... 138732 bp Themeda quadrivalvis QL-PLN-00-007 526 bp View
OP328197.1 nt Themeda quadrivalvis voucher T135_J... 138745 bp Themeda quadrivalvis QL-PLN-00-007 526 bp View
OP328198.1 nt Themeda triandra voucher T137_Jobso... 138850 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328199.1 nt Themeda triandra voucher T138_Jobso... 138851 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328200.1 nt Themeda triandra voucher T142_Jobso... 138585 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328201.1 nt Themeda triandra voucher T147_Jobso... 138857 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328202.1 nt Themeda triandra voucher T149_Jobso... 138856 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328203.1 nt Themeda triandra voucher T150_Jobso... 138868 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328204.1 nt Themeda triandra voucher T156_Jobso... 138838 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328205.1 nt Themeda triandra voucher T158_Jobso... 138776 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328206.1 nt Themeda triandra voucher T159_Jobso... 138789 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328207.1 nt Themeda triandra voucher T170_Jobso... 138858 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328208.1 nt Themeda triandra voucher T174_Jobso... 138867 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328209.1 nt Themeda triandra voucher T176_Jobso... 138870 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328210.1 nt Themeda triandra voucher T181_Jobso... 138854 bp Themeda triandra QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.