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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OM804193.1 nt Lycium sp. clone V12L0139 Z63 tRNA-... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804197.1 nt Lycium sp. clone V12L0060 14-02 tRN... 1088 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804198.1 nt Lycium sp. clone V12L0140 14-2-2-5 ... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804199.1 nt Lycium barbarum clone V12L0056 Qixi... 1089 bp Lycium barbarum QL-PLN-00-007 571 bp View
OM804201.1 nt Lycium sp. clone V12L0142 16-19-8-1... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804203.1 nt Lycium sp. clone V12L0144 16-16-9-1... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804204.1 nt Lycium sp. clone V12L0146 14-2-3-20... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804205.1 nt Lycium barbarum clone V12L0050 0902... 1089 bp Lycium barbarum QL-PLN-00-007 571 bp View
OM804207.1 nt Lycium sp. clone V12L0081 B7 tRNA-L... 1131 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804208.1 nt Lycium sp. clone V12L0046 Tianjing ... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804209.1 nt Lycium sp. clone V12L0067 15-2 tRNA... 1131 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804214.1 nt Lycium sp. clone V12L0116 M1 tRNA-L... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804216.1 nt Lycium sp. clone V12L0122 Qin No.5 ... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804217.1 nt Lycium sp. clone V12L0124 He12 tRNA... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804218.1 nt Lycium sp. clone V12L0044 Chaoji No... 1089 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804220.1 nt Lycium sp. clone V12L0082 B8 tRNA-L... 1131 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804221.1 nt Lycium sp. clone V12L0084 B9-2 tRNA... 1130 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804222.1 nt Lycium sp. clone V12L0083 B9-1 tRNA... 1131 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804223.1 nt Lycium sp. clone V12L0080 B6 tRNA-L... 1131 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804224.1 nt Lycium barbarum clone V12L0031 Ning... 1155 bp Lycium barbarum QL-PLN-00-007 595 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.