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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OK247961.1 nt Phleum subulatum trnT-trnL intergen... 1771 bp Phleum subulatum QL-PLN-00-007 610 bp View
OK247963.1 nt Pilgerochloa eigiana trnT-trnL inte... 1791 bp Pilgerochloa eigiana QL-PLN-00-007 620 bp View
OK247965.1 nt Puccinellia andersonii trnT-trnL in... 1708 bp Puccinellia andersonii QL-PLN-00-007 611 bp View
OK247966.1 nt Puccinellia angustata trnT-trnL int... 1708 bp Puccinellia angustata QL-PLN-00-007 610 bp View
OK247967.1 nt Puccinellia argentinensis trnT-trnL... 1708 bp Puccinellia argentinensis QL-PLN-00-007 617 bp View
OK247968.1 nt Puccinellia banksiensis trnT-trnL i... 1648 bp Puccinellia banksiensis QL-PLN-00-007 611 bp View
OK247969.1 nt Puccinellia biflora trnT-trnL inter... 1708 bp Puccinellia biflora QL-PLN-00-007 611 bp View
OK247970.1 nt Puccinellia borealis trnT-trnL inte... 1715 bp Puccinellia borealis QL-PLN-00-007 611 bp View
OK247971.1 nt Puccinellia convoluta trnT-trnL int... 1708 bp Puccinellia convoluta QL-PLN-00-007 611 bp View
OK247972.1 nt Puccinellia distans trnT-trnL inter... 1706 bp Puccinellia distans QL-PLN-00-007 611 bp View
OK247973.1 nt Puccinellia festuciformis trnT-trnL... 1708 bp Puccinellia festuciformis QL-PLN-00-007 611 bp View
OK247974.1 nt Puccinellia frigida trnT-trnL inter... 1700 bp Puccinellia frigida QL-PLN-00-007 611 bp View
OK247975.1 nt Puccinellia glauca trnT-trnL interg... 1706 bp Puccinellia glauca QL-PLN-00-007 611 bp View
OK247976.1 nt Puccinellia groenlandica trnT-trnL ... 1708 bp Puccinellia groenlandica QL-PLN-00-007 611 bp View
OK247977.1 nt Puccinellia grossheimiana trnT-trnL... 1699 bp Puccinellia grossheimiana QL-PLN-00-007 611 bp View
OK247978.1 nt Puccinellia hauptiana trnT-trnL int... 1706 bp Puccinellia hauptiana QL-PLN-00-007 611 bp View
OK247979.1 nt Puccinellia intermedia trnT-trnL in... 1705 bp Puccinellia intermedia QL-PLN-00-007 611 bp View
OK247980.1 nt Puccinellia maritima trnT-trnL inte... 1707 bp Puccinellia maritima QL-PLN-00-007 611 bp View
OK247981.1 nt Puccinellia nipponica trnT-trnL int... 1706 bp Puccinellia nipponica QL-PLN-00-007 611 bp View
OK247982.1 nt Puccinellia nuttalliana trnT-trnL i... 1707 bp Puccinellia nuttalliana QL-PLN-00-007 611 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.