Match details
Record ID: |
OK247961.1 |
Database: |
nt |
Go to original record |
Description: |
Phleum subulatum trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Phleum subulatum |
Original size: |
1771 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
826 |
1435 |
+ |
610 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaagggggtt ctcgaactag
151 aatacaaagg aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 gaatcgagtt aattacgttg tgttgttagt gttagtggaa ttccttctaa
251 attcgagaaa gaagggcttt atacatctaa taaacacgta tagatactga
301 tagcaaacga ttaatcacag aacccatatt ataatatagg ttctttattc
351 ttttttagaa tgaaatagaa atgattatga aataaaaaat tcagaatttt
401 tttagaatta ttgtgaatcc attccaatcg aatatttagt aatcaaatcc
451 ttcaattcaa agttttgagg tctttaaaaa agtggattaa tcggacgagg
501 acaaagagag agtcccattc tacatgtcaa tactgacaac aatgaaattt
551 ctagtaaaag gaaaatccgt cgactttata agtcgtgagg gttcaagtcc
601 ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
610 |
591 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.