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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_GX931306 nrnl1 Sequence 27214 from patent US 7868149. 13945 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX932336 nrnl1 Sequence 28244 from patent US 7868149. 14535 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX932470 nrnl1 Sequence 28378 from patent US 7868149. 1231 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX933219 nrnl1 Sequence 29127 from patent US 7868149. 7604 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX934230 nrnl1 Sequence 30138 from patent US 7868149. 47474 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX936024 nrnl1 Sequence 31932 from patent US 7868149. 48874 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX938151 nrnl1 Sequence 34059 from patent US 7868149. 11568 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX941094 nrnl1 Sequence 37002 from patent US 7868149. 7553 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX946895 nrnl1 Sequence 42803 from patent US 7868149. 11012 bp unidentified QL-PLN-00-007 614 bp View
NRN_GX950513 nrnl1 Sequence 46421 from patent US 7868149. 9948 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX972464 nrnl1 Sequence 68372 from patent US 7868149. 13915 bp unidentified QL-PLN-00-007 615 bp View
NRN_HB645482 nrnl1 Sequence 9 from Patent WO2008063370... 640 bp unidentified QL-PLN-00-007 532 bp View
OK012327.1 nt . 170086 bp Musa yunnanensis QL-PLN-00-007 594 bp View
OK012340.1 nt Musa rubinea chloroplast, complete ... 172514 bp Musa rubinea QL-PLN-00-007 594 bp View
OK012345.1 nt Musa ornata chloroplast, complete g... 169896 bp Musa ornata QL-PLN-00-007 594 bp View
OK012348.1 nt Musa mannii chloroplast, complete g... 170636 bp Musa mannii QL-PLN-00-007 594 bp View
OK012353.1 nt Musa laterita chloroplast, complete... 170143 bp Musa laterita QL-PLN-00-007 594 bp View
OK040768.1 nt Chimonobambusa angustifolia voucher... 139611 bp Chimonobambusa angustifolia QL-PLN-00-007 614 bp View
OK040769.1 nt Chimonobambusa utilis voucher Wu202... 139540 bp Chimonobambusa utilis QL-PLN-00-007 614 bp View
OK040956.1 nt Fallopia dentatoalata chloroplast, ... 162625 bp Fallopia dentatoalata QL-PLN-00-007 620 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.