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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN781015.1 nt Eragrostis tef isolate T68-2 plasti... 134349 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781016.1 nt Eragrostis tef isolate t101 chlorop... 134350 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781017.1 nt Eragrostis tef isolate T50-1 plasti... 134351 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781018.1 nt Eragrostis tef isolate t4 chloropla... 134351 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781973.1 nt Anisodus acutangulus chloroplast, c... 156079 bp Anisodus acutangulus QL-PLN-00-007 571 bp View
MN782326.1 nt Dendrocalamus yunnanicus voucher HT... 139432 bp Dendrocalamus yunnanicus QL-PLN-00-007 613 bp View
MN783350.1 nt Sinobambusa tootsik voucher HTY002 ... 139659 bp Sinobambusa tootsik QL-PLN-00-007 614 bp View
MN807280.1 nt Cucumis melo subsp. melo chloroplas... 156577 bp Cucumis melo subsp. melo QL-PLN-00-007 602 bp View
MN810967.1 nt Fritillaria sichuanica chloroplast,... 152062 bp Fritillaria sichuanica QL-PLN-00-007 607 bp View
MN810968.1 nt Fritillaria sichuanica chloroplast,... 152061 bp Fritillaria sichuanica QL-PLN-00-007 607 bp View
MN810969.1 nt Fritillaria yuzhongensis chloroplas... 151645 bp Fritillaria yuzhongensis QL-PLN-00-007 607 bp View
MN810970.1 nt Fritillaria yuzhongensis chloroplas... 151645 bp Fritillaria yuzhongensis QL-PLN-00-007 607 bp View
MN810971.1 nt Fritillaria sinica chloroplast, com... 152065 bp Fritillaria sinica QL-PLN-00-007 607 bp View
MN810972.1 nt Fritillaria dajinensis chloroplast,... 152035 bp Fritillaria dajinensis QL-PLN-00-007 607 bp View
MN810973.1 nt Fritillaria dajinensis chloroplast,... 151991 bp Fritillaria dajinensis QL-PLN-00-007 607 bp View
MN810974.1 nt Fritillaria monantha chloroplast, c... 152184 bp Fritillaria monantha QL-PLN-00-007 607 bp View
MN810975.1 nt Fritillaria monantha chloroplast, c... 152182 bp Fritillaria monantha QL-PLN-00-007 607 bp View
MN810976.1 nt Fritillaria monantha chloroplast, c... 152182 bp Fritillaria monantha QL-PLN-00-007 607 bp View
MN810977.1 nt Fritillaria anhuiensis chloroplast,... 152119 bp Fritillaria anhuiensis QL-PLN-00-007 607 bp View
MN810978.1 nt Fritillaria anhuiensis chloroplast,... 152119 bp Fritillaria anhuiensis QL-PLN-00-007 607 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.