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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK141670.1 nt Nenax arenicola isolate cX100 tRNA-... 1742 bp Nenax arenicola QL-PLN-00-007 591 bp View
MK141671.1 nt Nenax divaricata isolate cY1 tRNA-T... 1715 bp Nenax divaricata QL-PLN-00-007 591 bp View
MK141673.1 nt Nenax microphylla isolate cX83 trnT... 1661 bp Nenax microphylla QL-PLN-00-007 591 bp View
MK165233.1 nt Atractocarpus aragoensis voucher Mu... 1638 bp Atractocarpus aragoensis QL-PLN-00-007 567 bp View
MK165234.1 nt Atractocarpus bracteatus voucher Mo... 1629 bp Atractocarpus bracteatus QL-PLN-00-007 567 bp View
MK165235.1 nt Gardenia colnettiana voucher Bruy 1... 1635 bp Gardenia colnettiana QL-PLN-00-007 567 bp View
MK165238.1 nt Atractocarpus heterophyllus voucher... 1634 bp Atractocarpus heterophyllus QL-PLN-00-007 567 bp View
MK165240.1 nt Atractocarpus longistipitatus vouch... 1663 bp Atractocarpus longistipitatus QL-PLN-00-007 556 bp View
MK165242.1 nt Atractocarpus platyxylon voucher Mu... 1634 bp Atractocarpus platyxylon QL-PLN-00-007 567 bp View
MK165243.1 nt Atractocarpus sessilifolius voucher... 1626 bp Atractocarpus sessilifolius QL-PLN-00-007 573 bp View
MK165244.1 nt Atractocarpus sp. 1 AM-2019 voucher... 1635 bp Atractocarpus sp. 1 AM-2019 QL-PLN-00-007 567 bp View
MK165245.1 nt Atractocarpus sp. 3 AM-2019 voucher... 1637 bp Atractocarpus sp. 3 AM-2019 QL-PLN-00-007 567 bp View
MK165246.1 nt Atractocarpus sp. 4 AM-2019 voucher... 1640 bp Atractocarpus sp. 4 AM-2019 QL-PLN-00-007 573 bp View
MK165247.1 nt Atractocarpus sp. 6 AM-2019 voucher... 1641 bp Atractocarpus sp. 6 AM-2019 QL-PLN-00-007 567 bp View
MK165248.1 nt Atractocarpus sp. 7 AM-2019 voucher... 1639 bp Atractocarpus sp. 7 AM-2019 QL-PLN-00-007 567 bp View
MK165249.1 nt Atractocarpus sp. 8 AM-2019 voucher... 1633 bp Atractocarpus sp. 8 AM-2019 QL-PLN-00-007 567 bp View
MK165250.1 nt Atractocarpus sp. 9 AM-2019 voucher... 1635 bp Atractocarpus sp. 9 AM-2019 QL-PLN-00-007 567 bp View
MK165251.1 nt Atractocarpus sp. 10 AM-2019 vouche... 1640 bp Atractocarpus sp. 10 AM-2019 QL-PLN-00-007 573 bp View
MK165252.1 nt Atractocarpus sp. 11 AM-2019 vouche... 1635 bp Atractocarpus sp. 11 AM-2019 QL-PLN-00-007 567 bp View
MK165253.1 nt Atractocarpus sp. 12 AM-2019 vouche... 1635 bp Atractocarpus sp. 12 AM-2019 QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.