European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MF431170.1 nt Saccharum spontaneum isolate SES189... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431171.1 nt Saccharum spontaneum isolate SES323... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431172.1 nt Saccharum spontaneum isolate SM7916... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431173.1 nt Saccharum spontaneum isolate SSpont... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431174.1 nt Saccharum barberi isolate Sunnabile... 526 bp Saccharum barberi QL-PLN-00-007 526 bp View
MF431175.1 nt Saccharum sinense isolate TanzhonBa... 526 bp Saccharum sinense QL-PLN-00-007 526 bp View
MF431176.1 nt Saccharum robustum isolate TeboeSal... 526 bp Saccharum robustum QL-PLN-00-007 526 bp View
MF431177.1 nt Saccharum sinense isolate TekchaOki... 526 bp Saccharum sinense QL-PLN-00-007 526 bp View
MF431178.1 nt Saccharum barberi isolate Tereru tR... 526 bp Saccharum barberi QL-PLN-00-007 526 bp View
MF431179.1 nt Saccharum sinense isolate Tukuyu1 t... 526 bp Saccharum sinense QL-PLN-00-007 526 bp View
MF431180.1 nt Saccharum sinense isolate UbaDelNat... 526 bp Saccharum sinense QL-PLN-00-007 526 bp View
MF431181.1 nt Saccharum sinense isolate UbaIndia ... 526 bp Saccharum sinense QL-PLN-00-007 526 bp View
MF431182.1 nt Saccharum sinense isolate UbaNaquin... 526 bp Saccharum sinense QL-PLN-00-007 526 bp View
MF431183.1 nt Saccharum sinense isolate ChukChe t... 526 bp Saccharum sinense QL-PLN-00-007 526 bp View
MF445415.1 nt Pogostemon cablin isolate GY chloro... 152461 bp Pogostemon cablin QL-PLN-00-007 561 bp View
MF445416.1 nt Pogostemon cablin isolate VT chloro... 152461 bp Pogostemon cablin QL-PLN-00-007 561 bp View
MF445417.1 nt Pogostemon cablin isolate YN chloro... 152461 bp Pogostemon cablin QL-PLN-00-007 561 bp View
MF460827.1 nt Anemopaegma acutifolium voucher F. ... 168561 bp Anemopaegma acutifolium QL-PLN-00-007 566 bp View
MF460830.1 nt Anemopaegma arvense voucher F. Fire... 168839 bp Anemopaegma arvense QL-PLN-00-007 570 bp View
MF460834.1 nt Anemopaegma glaucum voucher F. Fire... 168694 bp Anemopaegma glaucum QL-PLN-00-007 566 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.