European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LS975131.1 nt Saccharum spontaneum genome assembl... 141348 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
LS975132.1 nt Saccharum hybrid cultivar genome as... 141181 bp Saccharum hybrid cultivar SP70-1143 QL-PLN-00-007 526 bp View
LS975134.1 nt Miscanthus sacchariflorus genome as... 141425 bp Miscanthus sacchariflorus QL-PLN-00-007 526 bp View
LS975135.1 nt Miscanthus floridulus genome assemb... 141264 bp Miscanthus floridulus QL-PLN-00-007 526 bp View
LS975136.1 nt Saccharum spontaneum genome assembl... 141153 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
LS975137.1 nt Miscanthus transmorrisonensis genom... 141263 bp Miscanthus sinensis QL-PLN-00-007 526 bp View
LS975138.1 nt Saccharum spontaneum genome assembl... 141233 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
LT222229.1 nt Brachypodium distachyon ecotype ABR... 135159 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558582.1 nt Brachypodium distachyon chloroplast... 135158 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558583.1 nt Brachypodium distachyon chloroplast... 135170 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558584.1 nt Brachypodium distachyon chloroplast... 135147 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558585.1 nt Brachypodium distachyon chloroplast... 135091 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558586.1 nt Brachypodium distachyon chloroplast... 135187 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558587.1 nt Brachypodium distachyon chloroplast... 135125 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558588.1 nt Brachypodium distachyon chloroplast... 135214 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558590.1 nt Brachypodium distachyon chloroplast... 135186 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558591.1 nt Brachypodium distachyon chloroplast... 135116 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558592.1 nt Brachypodium distachyon chloroplast... 135039 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558593.1 nt Brachypodium distachyon chloroplast... 135186 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558594.1 nt Brachypodium distachyon chloroplast... 135186 bp Brachypodium distachyon QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.