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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY040019.1 nt Delonix decaryi voucher Capuron 285... 1014 bp Delonix decaryi QL-PLN-00-007 591 bp View
KY040020.1 nt Delonix decaryi voucher D.J. Du Puy... 1014 bp Delonix decaryi QL-PLN-00-007 591 bp View
KY040021.1 nt Delonix baccal voucher Aronson 12 (... 1007 bp Delonix baccal QL-PLN-00-007 591 bp View
KY040022.1 nt Delonix elata voucher Herendeen 20-... 1007 bp Delonix elata QL-PLN-00-007 591 bp View
KY040024.1 nt Delonix regia voucher Bruneau 1320 ... 1014 bp Delonix regia QL-PLN-00-007 591 bp View
KY040030.1 nt Delonix velutina voucher Bruneau 13... 1018 bp Delonix velutina QL-PLN-00-007 591 bp View
KY040031.1 nt Delonix boiviniana voucher Bruneau ... 1014 bp Delonix boiviniana QL-PLN-00-007 591 bp View
KY040032.1 nt Delonix boiviniana voucher Bruneau ... 1016 bp Delonix boiviniana QL-PLN-00-007 591 bp View
KY040033.1 nt Delonix boiviniana voucher Bruneau ... 1014 bp Delonix boiviniana QL-PLN-00-007 591 bp View
KY040034.1 nt Delonix boiviniana voucher Andriami... 1013 bp Delonix boiviniana QL-PLN-00-007 591 bp View
KY040035.1 nt Delonix boiviniana voucher Bruneau ... 1037 bp Delonix boiviniana QL-PLN-00-007 591 bp View
KY040036.1 nt Delonix floribunda voucher Bruneau ... 1013 bp Delonix floribunda QL-PLN-00-007 591 bp View
KY040037.1 nt Delonix floribunda voucher Bruneau ... 1014 bp Delonix floribunda QL-PLN-00-007 591 bp View
KY040038.1 nt Delonix floribunda voucher Bruneau ... 1013 bp Delonix floribunda QL-PLN-00-007 591 bp View
KY040039.1 nt Delonix pumila voucher Bruneau 1394... 1013 bp Delonix pumila QL-PLN-00-007 591 bp View
KY040041.1 nt Delonix brachycarpa voucher Phillip... 1014 bp Delonix brachycarpa QL-PLN-00-007 591 bp View
KY040043.1 nt Delonix leucantha var. gracilis vou... 1014 bp Delonix leucantha var. gracilis QL-PLN-00-007 591 bp View
KY040046.1 nt Delonix boiviniana voucher Bruneau ... 1015 bp Delonix boiviniana QL-PLN-00-007 591 bp View
KY040047.1 nt Delonix floribunda voucher Bruneau ... 1014 bp Delonix floribunda QL-PLN-00-007 591 bp View
KY085909.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.