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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KM592098.1 nt Coptosperma madagascariense voucher... 1666 bp Coptosperma madagascariense QL-PLN-00-007 567 bp View
KM592099.1 nt Coptosperma nigrescens voucher De B... 1669 bp Coptosperma nigrescens QL-PLN-00-007 567 bp View
KM592100.1 nt Coptosperma nigrescens voucher Luke... 1669 bp Coptosperma nigrescens QL-PLN-00-007 567 bp View
KM592101.1 nt Coptosperma supra-axillare voucher ... 1667 bp Coptosperma supra-axillare QL-PLN-00-007 567 bp View
KM592102.1 nt Coptosperma sp. B SJ-2014 trnT-trnL... 1671 bp Coptosperma sp. B SJ-2014 QL-PLN-00-007 567 bp View
KM592103.1 nt Coptosperma sp. C SJ-2014 trnT-trnL... 1709 bp Coptosperma sp. C SJ-2014 QL-PLN-00-007 567 bp View
KM592104.1 nt Coptosperma sp. D SJ-2014 trnT-trnL... 1667 bp Coptosperma sp. D SJ-2014 QL-PLN-00-007 567 bp View
KM592105.1 nt Coptosperma sp. E SJ-2014 trnT-trnL... 1708 bp Coptosperma sp. E SJ-2014 QL-PLN-00-007 567 bp View
KM592106.1 nt Coptosperma sp. A SJ-2014 trnT-trnL... 1687 bp Coptosperma sp. A SJ-2014 QL-PLN-00-007 567 bp View
KM592107.1 nt Coptosperma graveolens voucher Mwac... 1665 bp Coptosperma graveolens QL-PLN-00-007 567 bp View
KM592108.1 nt Coptosperma peteri voucher Lovett &... 1690 bp Coptosperma peteri QL-PLN-00-007 567 bp View
KM592109.1 nt Dictyandra arborescens voucher Schm... 1679 bp Leptactina arborescens QL-PLN-00-007 567 bp View
KM592111.1 nt Gardenia rutenbergiana voucher Groe... 1647 bp Gardenia rutenbergiana QL-PLN-00-007 550 bp View
KM592112.1 nt Homollea longiflora voucher De Bloc... 1669 bp Homollea longiflora QL-PLN-00-007 567 bp View
KM592113.1 nt Homollea perrieri voucher Morat 470... 1669 bp Homollea perrieri QL-PLN-00-007 567 bp View
KM592114.1 nt Homolliella sericea voucher De Bloc... 1667 bp Paracephaelis sericea QL-PLN-00-007 567 bp View
KM592115.1 nt Ixora sp. SJ-2014 trnT-trnL interge... 1683 bp Ixora sp. SJ-2014 QL-PLN-00-007 565 bp View
KM592116.1 nt Leptactina benguelensis voucher Des... 1677 bp Leptactina benguelensis QL-PLN-00-007 567 bp View
KM592117.1 nt Leptactina delagoensis voucher Luke... 1679 bp Leptactina delagoensis QL-PLN-00-007 567 bp View
KM592118.1 nt Leptactina epinyctios voucher Desse... 1679 bp Leptactina epinyctios QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.