Match details
Record ID: |
KM592108.1 |
Database: |
nt |
Go to original record |
Description: |
Coptosperma peteri voucher Lovett & Congdon 2991 (BR) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Coptosperma peteri |
Original size: |
1690 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
760 |
1326 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 actcactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaacaa aggttcagaa
151 agtgaaaagg ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct gcattagtag agaaatcttt ccatctaaaa ttccgaaagg
251 gtaaagtgaa ggataaacgt atatatacgt attgaatact atgtcaaatg
301 attaatgacg actcgactga atctgtattt tttatatgaa aacggaagaa
351 ttggtgtgaa tagattccac attgaagaaa gaatcgaata ttcattgatc
401 aaatgattca ctccatagtc tgatagatct tttcaagaat tgattaatcg
451 gacgagaata aagatagagt cctgttctac atgtcaatgt cggcaacaat
501 gaaatttata gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt
551 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.