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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815566.1 nt Gallienia sclerophylla voucher Erik... 1701 bp Gallienia sclerophylla QL-PLN-00-007 567 bp View
KJ815567.1 nt Gallienia sp. Razafimandimbison & K... 1710 bp Gallienia sp. Razafimandimbison & Kroger 943 QL-PLN-00-007 567 bp View
KJ815568.1 nt Lemyrea ciliolata voucher Rabenanto... 1691 bp Lemyrea ciliolata QL-PLN-00-007 572 bp View
KJ815569.1 nt Lemyrea sp. Razafimandimbison et al... 1657 bp Lemyrea sp. Razafimandimbison et al. 1243 QL-PLN-00-007 572 bp View
KJ815570.1 nt Polysphaeria acuminata voucher Raza... 1690 bp Polysphaeria acuminata QL-PLN-00-007 567 bp View
KJ815571.1 nt Polysphaeria aethiopica voucher Puf... 1697 bp Polysphaeria aethiopica QL-PLN-00-007 567 bp View
KJ815573.1 nt Polysphaeria grandiflora voucher Da... 1461 bp Polysphaeria grandiflora QL-PLN-00-007 567 bp View
KJ815574.1 nt Polysphaeria lepidocarpa voucher Ba... 1656 bp Polysphaeria lepidocarpa QL-PLN-00-007 567 bp View
KJ815575.1 nt Polysphaeria macrophylla voucher Ma... 1689 bp Polysphaeria macrophylla QL-PLN-00-007 567 bp View
KJ815576.1 nt Polysphaeria maxima voucher Razakam... 1683 bp Polysphaeria maxima QL-PLN-00-007 567 bp View
KJ815577.1 nt Polysphaeria multiflora voucher Luk... 1697 bp Polysphaeria multiflora QL-PLN-00-007 567 bp View
KJ815578.1 nt Polysphaeria parvifolia voucher Ive... 1697 bp Polysphaeria parvifolia QL-PLN-00-007 567 bp View
KJ815579.1 nt Polysphaeria sp. Razafimandimbison ... 1670 bp Polysphaeria sp. Razafimandimbison & Ravelonarivo 604 QL-PLN-00-007 567 bp View
KJ815580.1 nt Polysphaeria capuronii voucher Andr... 1687 bp Polysphaeria capuronii QL-PLN-00-007 567 bp View
KJ815582.1 nt Polysphaeria tubulosa voucher Rabev... 1690 bp Polysphaeria tubulosa QL-PLN-00-007 567 bp View
KJ815584.1 nt Rutidea parviflora voucher Adam 201... 1660 bp Rutidea parviflora QL-PLN-00-007 571 bp View
KJ815585.1 nt Tennantia sennii voucher Luke 8357 ... 1691 bp Tennantia sennii QL-PLN-00-007 567 bp View
KJ815586.1 nt Coptosperma sp. Razakamalala RZK 62... 1673 bp Coptosperma sp. Razakamalala RZK 6258 QL-PLN-00-007 567 bp View
KJ815587.1 nt Coptosperma sp. Razakamalala RZK 64... 1664 bp Coptosperma sp. Razakamalala RZK 6490 QL-PLN-00-007 567 bp View
KJ815588.1 nt Coptosperma sp. Eriksson et al. T95... 1660 bp Coptosperma sp. Eriksson et al. T957 QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.