Match details
Record ID: |
KJ815569.1 |
Database: |
nt |
Go to original record |
Description: |
Lemyrea sp. Razafimandimbison et al. 1243 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL-UAA) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Lemyrea sp. Razafimandimbison et al. 1243 |
Original size: |
1657 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
764 |
1335 |
+ |
572 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaacgaa accaaaggtt
151 cagaaagtga aaaacggata ggtgcagaga ctcaacggaa gctgttctaa
201 caaatggagt tggctgcgtt agtagagaaa tctttccatc taaaattccg
251 aaaggataaa gtgaaggata aacgtatata tatgtattga atactatatc
301 aaatgattaa tgacgactca actgaatctg tattttttat atgaaaacgg
351 aagaattggt gtgaatagat tccacattga agaaagaatc gaatattcat
401 tgatcaaatg attcactcca tagtctgata gatcttttca agaattgatt
451 aatcggacga gaataaagat agagtcccgt tctacatgtc aatgtcggca
501 acaatgaaat ttatagtaag aggaaaatcc gtcgacttta aaaatcgtga
551 gggttcaagt ccctctatcc cc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.58e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
572 |
553 |
2.58e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.