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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815514.1 nt Gardenia fiorii voucher SMP 209 (UP... 1512 bp Gardenia fiorii QL-PLN-00-007 575 bp View
KJ815516.1 nt Gardenia latifolia voucher Fagerlin... 1608 bp Gardenia latifolia QL-PLN-00-007 550 bp View
KJ815517.1 nt Gardenia mannii voucher Takeuchi s.... 1633 bp Gardenia mannii QL-PLN-00-007 550 bp View
KJ815518.1 nt Gardenia manongarivensis voucher Ra... 1638 bp Gardenia manongarivensis QL-PLN-00-007 550 bp View
KJ815519.1 nt Gardenia mollis voucher Mouly 808 (... 1606 bp Gardenia mollis QL-PLN-00-007 573 bp View
KJ815520.1 nt Gardenia nitida voucher Petterson H... 1546 bp Gardenia nitida QL-PLN-00-007 550 bp View
KJ815522.1 nt Gardenia oudiepe voucher Mouly 60 (... 1679 bp Gardenia oudiepe QL-PLN-00-007 550 bp View
KJ815523.1 nt Gardenia posoquerioides voucher Luk... 1661 bp Gardenia posoquerioides QL-PLN-00-007 550 bp View
KJ815524.1 nt Gardenia resinifera voucher Klacken... 1631 bp Gardenia resinifera QL-PLN-00-007 550 bp View
KJ815525.1 nt Gardenia resiniflua voucher Luke 10... 1658 bp Gardenia resiniflua QL-PLN-00-007 550 bp View
KJ815526.1 nt Gardenia rutenbergiana voucher Kare... 1587 bp Gardenia rutenbergiana QL-PLN-00-007 550 bp View
KJ815527.1 nt Gardenia rutenbergiana voucher Raza... 1643 bp Gardenia rutenbergiana QL-PLN-00-007 550 bp View
KJ815528.1 nt Gardenia saxatilis voucher Larsen e... 1617 bp Gardenia saxatilis QL-PLN-00-007 550 bp View
KJ815529.1 nt Gardenia ternifolia voucher Lykke 8... 1620 bp Gardenia ternifolia QL-PLN-00-007 550 bp View
KJ815530.1 nt Gardenia thunbergia voucher Wall 15... 1637 bp Gardenia thunbergia QL-PLN-00-007 550 bp View
KJ815531.1 nt Gardenia transvenulosa voucher Luke... 1610 bp Gardenia transvenulosa QL-PLN-00-007 550 bp View
KJ815534.1 nt Hyperacanthus sp. Razakamalala RZK ... 1715 bp Hyperacanthus sp. Razakamalala RZK 6443 QL-PLN-00-007 567 bp View
KJ815535.1 nt Hyperacanthus sp. Bremer et al. 512... 1697 bp Hyperacanthus sp. Bremer et al. 5123 QL-PLN-00-007 567 bp View
KJ815536.1 nt Hyperacanthus sp. Razafimandimbison... 1660 bp Hyperacanthus sp. Razafimandimbison et al. 1154 QL-PLN-00-007 567 bp View
KJ815537.1 nt Hyperacanthus sp. Razafimandimbison... 1697 bp Hyperacanthus sp. Razafimandimbison et al. 1156 QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.