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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ136950.1 nt Atractocarpus heterophyllus voucher... 1630 bp Atractocarpus heterophyllus QL-PLN-00-007 567 bp View
KJ136952.1 nt Casasia clusiifolia voucher FG 67-8... 1731 bp Casasia clusiifolia QL-PLN-00-007 571 bp View
KJ136953.1 nt Catunaregam nilotica voucher Luke 8... 1747 bp Catunaregam nilotica QL-PLN-00-007 567 bp View
KJ136956.1 nt Gardenia volkensii voucher Luke 904... 1699 bp Gardenia volkensii QL-PLN-00-007 550 bp View
KJ136957.1 nt Euclinia sp. Bremer et al. 5113 vou... 1705 bp Euclinia sp. Bremer et al. 5113 QL-PLN-00-007 567 bp View
KJ136959.1 nt Euclinia suavissima voucher Razafim... 1669 bp Melanoxerus suavissimus QL-PLN-00-007 567 bp View
KJ136962.1 nt Rosenbergiodendron longiflorum vouc... 1749 bp Rosenbergiodendron longiflorum QL-PLN-00-007 567 bp View
KJ145743.1 nt Solanum dimidiatum isolate LB3216 t... 1827 bp Solanum dimidiatum QL-PLN-00-007 571 bp View
KJ145745.1 nt Solanum dimidiatum isolate LB3495 t... 1812 bp Solanum dimidiatum QL-PLN-00-007 571 bp View
KJ434115.1 nt Paracolpodium altaicum voucher Alt ... 962 bp Paracolpodium altaicum QL-PLN-00-007 611 bp View
KJ522748.1 nt Bergbambos tessellata plastid, part... 107455 bp Bergbambos tessellata QL-PLN-00-007 614 bp View
KJ539157.1 nt Poa sp. Alt 09-01 tRNA-Leu (trnL) g... 976 bp Poa sp. Alt 09-01 QL-PLN-00-007 611 bp View
KJ539159.1 nt Paracolpodium sp. Alt 1108 tRNA-Leu... 961 bp Paracolpodium sp. Alt 1108 QL-PLN-00-007 611 bp View
KJ539178.1 nt Catabrosa capusii voucher Alt 10-11... 969 bp Catabrosa capusii QL-PLN-00-007 611 bp View
KJ680494.1 nt Tarennoidea wallichii voucher XPW24... 1733 bp Tarennoidea wallichii QL-PLN-00-007 567 bp View
KJ680495.1 nt Benkara scandens voucher XPW160 trn... 1201 bp Benkara scandens QL-PLN-00-007 567 bp View
KJ680496.1 nt Duperrea pavettifolia voucher XPW25... 1738 bp Duperrea pavettifolia QL-PLN-00-007 567 bp View
KJ680497.1 nt Guihaiothamnus acaulis voucher XPW2... 1761 bp Guihaiothamnus acaulis QL-PLN-00-007 566 bp View
KJ680500.1 nt Wendlandia cavaleriei voucher XPW19... 1731 bp Wendlandia cavaleriei QL-PLN-00-007 566 bp View
KJ680502.1 nt Wendlandia merrilliana voucher XPW2... 1241 bp Wendlandia merrilliana QL-PLN-00-007 566 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.