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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF488277.1 nt Fadogia triphylla var. giorgii vouc... 1666 bp Fadogia triphylla var. giorgii QL-PLN-00-007 552 bp View
KF488283.1 nt Keetia gueinzii voucher Verstraete ... 1508 bp Keetia gueinzii QL-PLN-00-007 552 bp View
KF488284.1 nt Keetia venosa voucher Verstraete & ... 1526 bp Keetia venosa QL-PLN-00-007 552 bp View
KF488286.1 nt Keetia venosa voucher Verstraete & ... 1506 bp Keetia venosa QL-PLN-00-007 552 bp View
KF488287.1 nt Keetia zanzibarica voucher Verstrae... 1535 bp Keetia zanzibarica QL-PLN-00-007 552 bp View
KF488288.1 nt Keetia zanzibarica voucher Verstrae... 1508 bp Keetia zanzibarica QL-PLN-00-007 552 bp View
KF488289.1 nt Multidentia concrescens voucher Ver... 1685 bp Multidentia concrescens QL-PLN-00-007 552 bp View
KF488290.1 nt Multidentia crassa voucher Verstrae... 1692 bp Multidentia crassa QL-PLN-00-007 552 bp View
KF488291.1 nt Multidentia crassa voucher Verstrae... 1685 bp Multidentia crassa QL-PLN-00-007 552 bp View
KF488292.1 nt Multidentia exserta voucher Verstra... 1692 bp Multidentia exserta QL-PLN-00-007 552 bp View
KF488294.1 nt Multidentia fanshawei voucher Verst... 1692 bp Multidentia fanshawei QL-PLN-00-007 552 bp View
KF488295.1 nt Psydrax faulknerae voucher Verstrae... 1635 bp Psydrax faulknerae QL-PLN-00-007 552 bp View
KF488299.1 nt Canthium bugoyense voucher Verstrae... 1679 bp Canthium bugoyense QL-PLN-00-007 552 bp View
KF488301.1 nt Rytigynia decussata voucher Verstra... 1697 bp Rytigynia decussata QL-PLN-00-007 552 bp View
KF488303.1 nt Rytigynia eickii voucher Verstraete... 1564 bp Rytigynia eickii QL-PLN-00-007 552 bp View
KF488306.1 nt Rytigynia flavida voucher Verstraet... 1649 bp Rytigynia flavida QL-PLN-00-007 552 bp View
KF488310.1 nt Rytigynia sp. Verstraete & Lemaire ... 1672 bp Rytigynia sp. Verstraete & Lemaire 371 QL-PLN-00-007 558 bp View
KF488312.1 nt Rytigynia stolzii voucher Verstraet... 1655 bp Rytigynia stolzii QL-PLN-00-007 552 bp View
KF488315.1 nt Rytigynia uhligii voucher Verstraet... 1656 bp Rytigynia uhligii QL-PLN-00-007 552 bp View
KF488316.1 nt Rytigynia uhligii voucher Verstraet... 1649 bp Rytigynia uhligii QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.