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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JQ958230.1 nt Canthium ciliatum voucher Lemaire &... 1678 bp Canthium ciliatum QL-PLN-00-007 552 bp View
JQ958231.1 nt Canthium glaucum voucher Kuchar 174... 1694 bp Canthium glaucum QL-PLN-00-007 552 bp View
JQ958232.1 nt Canthium inerme voucher Lemaire & V... 1708 bp Canthium inerme QL-PLN-00-007 552 bp View
JQ958233.1 nt Canthium kuntzeanum voucher Lemaire... 1694 bp Canthium kuntzeanum QL-PLN-00-007 552 bp View
JQ958234.1 nt Canthium suberosum voucher Burrows ... 1687 bp Canthium suberosum QL-PLN-00-007 552 bp View
JQ958235.1 nt Canthium spinosum voucher Lemaire &... 1694 bp Canthium spinosum QL-PLN-00-007 552 bp View
JQ958236.1 nt Fadogia ancylantha voucher Dessein ... 1694 bp Fadogia ancylantha QL-PLN-00-007 552 bp View
JQ958238.1 nt Fadogia salictaria voucher Malaisse... 1694 bp Fadogia salictaria QL-PLN-00-007 552 bp View
JQ958239.1 nt Fadogia fuchsioides voucher Dessein... 1694 bp Fadogia fuchsioides QL-PLN-00-007 552 bp View
JQ958240.1 nt Fadogia homblei voucher Lemaire & V... 1682 bp Fadogia homblei QL-PLN-00-007 552 bp View
JQ958242.1 nt Fadogia tetraquetra voucher Lemaire... 883 bp Fadogia tetraquetra QL-PLN-00-007 552 bp View
JQ958244.1 nt Fadogia cienkowskii voucher Dessein... 1678 bp Fadogia cienkowskii QL-PLN-00-007 552 bp View
JQ958245.1 nt Fadogiella stigmatoloba voucher Gil... 1638 bp Fadogiella stigmatoloba QL-PLN-00-007 552 bp View
JQ958246.1 nt Rytigynia membranacea voucher Lache... 1684 bp Rytigynia membranacea QL-PLN-00-007 552 bp View
JQ958247.1 nt Rytigynia monantha voucher Niyongab... 1698 bp Rytigynia monantha QL-PLN-00-007 552 bp View
JQ958248.1 nt Rytigynia neglecta voucher Dessein ... 1687 bp Rytigynia neglecta QL-PLN-00-007 552 bp View
JQ958249.1 nt Rytigynia rubra voucher Dessein et ... 1687 bp Rytigynia rubra QL-PLN-00-007 552 bp View
JQ958251.1 nt Vangueriella chlorantha voucher Des... 1720 bp Vangueriella chlorantha QL-PLN-00-007 570 bp View
JQ958253.1 nt Vangueriella nigricans voucher Dess... 1697 bp Vangueriella nigricans QL-PLN-00-007 552 bp View
JQ958254.1 nt Vangueriella laxiflora voucher Lach... 1680 bp Vangueriella laxiflora QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.