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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HG998553.1 nt Oryza rufipogon genome assembly, or... 134536 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998554.1 nt Oryza rufipogon genome assembly, or... 134536 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998555.1 nt Oryza rufipogon genome assembly, or... 134517 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998556.1 nt Oryza rufipogon genome assembly, or... 134513 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998557.1 nt Oryza rufipogon genome assembly, or... 134535 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998558.1 nt Oryza rufipogon genome assembly, or... 134516 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998559.1 nt Oryza rufipogon genome assembly, or... 134503 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998560.1 nt Oryza rufipogon genome assembly, or... 134537 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998561.1 nt Oryza rufipogon genome assembly, or... 134537 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998562.1 nt Oryza rufipogon genome assembly, or... 134547 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998563.1 nt Oryza rufipogon genome assembly, or... 134543 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998564.1 nt Oryza rufipogon genome assembly, or... 134537 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998565.1 nt Oryza rufipogon genome assembly, or... 134516 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998566.1 nt Oryza rufipogon genome assembly, or... 134484 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998567.1 nt Oryza rufipogon genome assembly, or... 134536 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998568.1 nt Oryza rufipogon genome assembly, or... 134537 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998569.1 nt Oryza rufipogon genome assembly, or... 134595 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998570.1 nt Oryza rufipogon genome assembly, or... 134516 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HM042585.1 nt Spermacoce princeae voucher Luke & ... 1769 bp Spermacoce princeae QL-PLN-00-007 587 bp View
HM066935.1 nt Nicotiana tabacum transgenic chloro... 17958 bp Nicotiana tabacum QL-PLN-00-007 577 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.