Amplicon details

Amplicon:

531 bp
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101   gggcaatcct gagccaaatc ccttttttga aaaaacaagc ggttctcaaa
151   ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201   taacgaatcg aagtaataac gattaatcac agaacccata ttataatata
251   ggttctttat ttgattttta gaatgaaatt aggaaggatt atgaaataga
301   aaattcataa tttttttaga attattgtga atctattcca atcgaatatt
351   gagtaatcaa atccttcaat tcattgtttt cgagatcttt taaaaataaa
401   aagtggatta atcggacgag gataaagaga gagtcccatt ctacatgtca
451   atactgacaa caatgaaatt tctagtaaaa ggaaaatccg tcgactttat
501   aagtcgtgag ggttcaagtc cctctatccc c 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH181172.1 nt Andropogon ingratus isolate TK713 c... 139764 bp Andropogon ingratus QL-PLN-00-007 531 bp View
MH181208.1 nt Schizachyrium salzmannii isolate TK... 139775 bp Schizachyrium salzmannii QL-PLN-00-007 531 bp View
MH181217.1 nt Andropogon reedii isolate TK735 chl... 139743 bp Schizachyrium reedii QL-PLN-00-007 531 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.