Amplicon details

Amplicon:

560 bp
1     cgaaatcggt agacgctacg gacttaattg tattgagcct tagtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aaaaaaaaag
101   ggcaatcctg agccaaatcc tgtttaagtt caaaaagaaa taggataggt
151   gcagagactc aatggaagtt gttcgaacaa atggggttga ctgcttttgc
201   gttggtaaaa gaatacttct tcagcaagga taaacatata gaatacataa
251   tgaaaaaact atttcaaaaa agacgactgc ttttgatttc tattttttta
301   taggttatag caaaaagaat tatatgaaaa atcaaaagaa tccttgtgaa
351   tcgatttcaa attgaagaaa gaatcaaata gaatattcac taatcaaaca
401   attcactcca tagtctgata aatcaatgga ttaattggac gagaataaag
451   atagagtccc attctacatg tcaatatcaa taccgacaac aatgaaattt
501   atagtaagag gaaaatccgt cgactttaaa aatcgtgagg gttcaagtcc
551   ctctatcccc  

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY972886.1 nt Vatica micrantha isolate 01-0092 tR... 1805 bp Vatica micrantha QL-PLN-00-007 560 bp View
KY972887.1 nt Vatica micrantha isolate 01-0178 tR... 1804 bp Vatica micrantha QL-PLN-00-007 560 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.