JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

580 bp

1     cgaaatcggt agacgctacg gacttaattg tattgagcct tagtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aaaaaaaaag
101   ggcaatcctg agccaaatcc tgtttaagtt caaaaagaaa taggataggt
151   gcagagactc aatggaagtt gttcgaacaa atggggttga ctgcttttgc
201   gttggtaaaa gaatacttct atcgaaactt cagcaaggat aaacatatag
251   aatacataat gaaaaaacta tttcaaaaaa gacgactggg acacctattc
301   ttttgatttc tattttttta taggttatag caaaaagaat tatatgaaaa
351   atcaaaagaa tccttgtgaa tcgatttcaa attgaagaaa gaatcaaata
401   gaatattcac taatcaaaca attcactcca tagtctgata aatcaatgga
451   ttaattggac gagaataaag atagagtccc attctacatg tcaatatcaa
501   taccgacaac aatgaaattt atagtaagag gaaaatccgt cgactttaaa
551   aatcgtgagg gttcaagtcc ctctatcccc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
KY972878.1	nt	Vatica coriacea isolate KASvco1 tRN...	1833 bp	Vatica coriacea	QL-PLN-00-007	580 bp	View
KY972879.1	nt	Vatica coriacea isolate KASvco2 tRN...	1833 bp	Vatica coriacea	QL-PLN-00-007	580 bp	View
KY972893.1	nt	Vatica odorata subsp. mindanensis i...	1831 bp	Vatica odorata subsp. mindanensis	QL-PLN-00-007	580 bp	View
KY972894.1	nt	Vatica sarawakensis isolate 10-3487...	1825 bp	Vatica sarawakensis	QL-PLN-00-007	580 bp	View
KY972895.1	nt	Vatica sarawakensis isolate 10-3744...	1826 bp	Vatica sarawakensis	QL-PLN-00-007	580 bp	View
KY972897.1	nt	Vatica vinosa isolate 01-0265 tRNA-...	1819 bp	Vatica vinosa	QL-PLN-00-007	580 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.