Amplicon details

Amplicon:

563 bp
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaag gataggtgca gagactcaac ggaagctgtt ctaacaaatg
201   gagttggctg cgttagtaga gaaatctttc catctaaaat tccgaaagga
251   taaagtgaag gataaacgta tatacgtatt gaatactata tcaaatgatt
301   aatgacgact cgactgaatc tgtattttta tataaaaacg gaagaattgg
351   tgtgaataga ttccacattg aagaaagaat cgaatattca ttgatcaaat
401   gattcactcc atagtctgat agatcttttc aagaatttat taatcggacg
451   agaataaaga tagagtcccg ttctacatgt caatgtcggc aacaatgaaa
501   tttatagtaa gaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag
551   tccctctatc ccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815454.1 nt Empogona lanceolata voucher Bremer ... 1698 bp Empogona lanceolata QL-PLN-00-007 563 bp View
KJ815458.1 nt Empogona ruandensis voucher Kuchar ... 1694 bp Empogona ruandensis QL-PLN-00-007 563 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.