JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

604 bp

1     cgaaatcggt agacgctacg gacttaattg tattgagcct tggtatggaa
51    acctactaag tgaaaacttt caaattcaga gaaaccctgg aattaaaaat
101   gggcaatcct gagccaaatc ttcttttccg aaaccaaacc caaatacagg
151   ggttcaaaaa gcgcgaataa aaaaggatag gtgcagagac tcaacggaag
201   ttgttctaac aaatagagtt tactatgttg cattgacaaa ggaatctttt
251   cattgaaact ccagaaagga tgaaggataa atcttaataa acatatgtat
301   acctaataaa catatgtata cctaccgaaa tagtatatca aatgattaat
351   gacgactcaa atttttattt taaaatgaaa gaattgttag gaagcgattc
401   cgagttgaag aaagaatcga ctcttcattg ataaaataag tgtcactcca
451   cagtctgaga gatcttttga cgaactgaga ttaatcggac gagaataaag
501   atagagtccc attatacatg tcaatactga caacaaggaa attgatagta
551   aaaggaaaat ccgtcgactt tagaaatcat gagggttcaa gtccctctat
601   cccc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
KX078522.1	nt	Rhodiola rosea genotype Akureyri tR...	963 bp	Rhodiola rosea	QL-PLN-00-007	604 bp	View
KX078536.1	nt	Rhodiola rosea genotype Halti tRNA-...	963 bp	Rhodiola rosea	QL-PLN-00-007	604 bp	View
KX078539.1	nt	Rhodiola rosea genotype Kilpisjarvi...	963 bp	Rhodiola rosea	QL-PLN-00-007	604 bp	View
KX078541.1	nt	Rhodiola rosea genotype Kola tRNA-L...	963 bp	Rhodiola rosea	QL-PLN-00-007	604 bp	View
KX078542.1	nt	Rhodiola rosea genotype Kvaloya tRN...	963 bp	Rhodiola rosea	QL-PLN-00-007	604 bp	View
KX078552.1	nt	Rhodiola rosea genotype Sligo tRNA-...	963 bp	Rhodiola rosea	QL-PLN-00-007	604 bp	View
KX078561.1	nt	Rhodiola rosea genotype Varanger tR...	963 bp	Rhodiola rosea	QL-PLN-00-007	604 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.