Amplicon details

Amplicon:

572 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acttactaag tgatcacttt caaattcaga gaaaccctgg aattaacaaa
101   aatgggcaat cctgagccaa atcctgtttt ctgaaaacaa acaaaggttc
151   agaaaaaaag gataggtgca gagactcaat ggaagctatt ctaacaaatg
201   gagttaaatg cgttggtaga ggaatcttta catcgaaact tcagaaagaa
251   aaagaatgaa gtgaaggata aacgtatata catacgtatt gaatactata
301   tcaaatgatt aatgacgacc cgaatccgta ttttttctat aaaaaaatag
351   aagaattggt gtgaatcgat tctacattga agaaagaatc gaatattcat
401   tgatcaaatc attcactcca tagtctgata gatcttttga agaactgatt
451   aatcggacga gaataaagat agagtcccgt tctacatgtc aatgccggca
501   acaatgaaat ttatagtaag aggaaaatcc gtcgacttta aaaatcgtga
551   gggttcaagt ccctctatcc cc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP748223.1 nt Physalis ixocarpa chloroplast, comp... 156871 bp Physalis ixocarpa QL-PLN-00-007 572 bp View
OP748222.1 nt Physalis longifolia var. subglabrat... 156735 bp Physalis longifolia var. subglabrata QL-PLN-00-007 572 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.