Amplicon details

Amplicon:

556 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctgctaag tgataacttt caaattcaga gaaacccagg aactaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcaaaa
151   aacgaaaaaa agggataggt gcagagactc aatggaagct gttctaacaa
201   atggagttca ctgcgctggt agaggaatct ttccatggaa acttcagaaa
251   ggatgaagga taaatggatc tattgaatac tatatcgaat gattcacgat
301   ggcccgaatc tgtatttttt aatatgaaaa atggaagaat tggtgtgaat
351   tgattccaca ttgaagaaaa aatcgaatat tcattcatca aatcattcac
401   tccatagtcc gatagatctt ttcaagaact gattaatcgg acgagaataa
451   agatagagtc ccgttctaca tgtcaatacc ggcaacaatg aaatttatag
501   taataggaaa atccgtcgac tttaaaaatc gtgagggttc aagtccctct
551   atcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR038698.1 nt Ajuga forrestii chloroplast, comple... 150472 bp Ajuga forrestii QL-PLN-00-007 556 bp View
MN814851.1 nt Ajuga campylantha chloroplast, comp... 150478 bp Ajuga campylantha QL-PLN-00-007 556 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.