Amplicon details

Amplicon:

521 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acttactaag tgatcacttt caaattcaga gaaaccctgg aattaataaa
101   aatgggcaat cctgagccaa atcacgtttt ccgaaaacaa aaaaaggttc
151   agaaagcgaa aataaaaaag gataggtgca gagactcgat ggaagctgtt
201   ctaacgaatg gagttgattg tcttacgtta ttagagtatt agaggaatcc
251   ttctatcgaa actattgaaa cttcagaagg ataaacctat atacataata
301   cagaagaatt gttgtcaatc gattccatat tgaagaaaga atcgatcatt
351   gatcaaacca ttcactccat aatctgatag atcttttgaa gaactgatta
401   atcggacgag aataaagata gagtcccgtt ctacatgtca ataccggcaa
451   caatgaaatt tatagtaaga ggaaaatccg tcgatttcaa aaatcgtgag
501   ggttcaagtc cctctatccc c 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY879120.1 nt Hieracium echioides subsp. echioide... 944 bp Hieracium echioides subsp. echioides QL-PLN-00-007 521 bp View
AY879119.1 nt Andryala integrifolia voucher Schuh... 943 bp Andryala integrifolia QL-PLN-00-007 521 bp View
AY879128.1 nt Hieracium pilosella voucher Lippert... 935 bp Pilosella officinarum QL-PLN-00-007 521 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.