Amplicon details

Amplicon:

592 bp
1     cgaaatcggt agacgctacg gacttaattg gtttgagcct tagtatggaa
51    acttactaag tgataacttt caaactcaga gaaaccctgg aattaaaaaa
101   atgggcaatc ctgagcccac tcctgctttc caaaaggaaa gaataaaaaa
151   ggataggtgc agagactcaa tggaagctgt tctaacaaat ggagttgact
201   gtcttgcgtt gtgatatgtt ataagaattc ttcaatctaa actccaaaaa
251   ggatgaagaa gaaacctata ggcatacgta cttaaatact atggtataat
301   aaaaaaatat aaaatgaaaa aatattgata acgacccgaa tcttcgtttt
351   atgaatatga aaaaatggaa gaatttttgt gaatcaattc caagttgaag
401   aaagaatcga atattcgttt attaaattaa agcatttact ccccttgata
451   gatcttttga agaaccgatc catcggatga gaatgaagat agagtcccat
501   tctacgtgtc aaccccgaca acaacgaaat ttatagtaag aggaaaatcc
551   gtcgacttta taaatcgtga gggttcaagt ccctctatcc cc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON229569.1 nt Persicaria capitata voucher SD404 c... 158852 bp Persicaria capitata QL-PLN-00-007 592 bp View
OQ390024.2 nt Persicaria capitata chloroplast, co... 158826 bp Persicaria capitata QL-PLN-00-007 592 bp View
OR730796.1 nt Persicaria capitata voucher THL chl... 160070 bp Persicaria capitata QL-PLN-00-007 592 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.