Amplicon details

Amplicon:

566 bp
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaag gataggtgca gagactcaac ggaagctgtt ctaacaaatg
201   gagttggctg cgttagtaga gaaatctttc catctaaaat tccgaaagga
251   taaagtgaag gataaacgta tatatacgta ttgaatacta tatcaaatga
301   ttaatgacga cccgactgaa tctgtatttt ttatatgaaa gcggaagaat
351   tggtgtgaat agattccaca ttgaagaaag aatcgaatat tcattgatca
401   aatgtttcac tccatagtct gatagatctt ttcaagaatt gattaatcgg
451   acgagaataa agatagagtc ccgttctaca tgtcaatgtc ggcaacaatg
501   aaatttatag taagaggaaa atccgtcgac tttaaaaatc gtgagggttc
551   aagtccctct atcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF965268.1 nt Tamilnadia uliginosa isolate BR072 ... 1707 bp Tamilnadia uliginosa QL-PLN-00-007 566 bp View
KF965267.1 nt Tamilnadia uliginosa isolate BQ082 ... 1740 bp Tamilnadia uliginosa QL-PLN-00-007 566 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.