Amplicon details

Amplicon:

563 bp
1     cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51    acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101   gggcaatcct gagccaaatc tttttttttc aaaaaaagga taggtgcaga
151   gactcaatgg aagctgttct aacaaatgga gttgattacg ttacatgcgc
201   tagtagccgg aatccttcta tcaaaattat tgaaaagata cccgccctat
251   atatgtagat atacatactc acatagtaaa cgattgatta atcgcagccc
301   aaatccatta tatatgaaaa atttaagaat cattgtgaat ctattccatt
351   cgatattcca atcgaagttg gaggaagaat cgaatattaa atgatcaaat
401   tattcattcc aaagtctgat agatcttttg aaaaaccgat tattcgaacg
451   agaataaaga gagagtccca ttctacgtgt caataccgac aacaatgaaa
501   tttatagtaa aaggaaaatc cgtcgacttt aaaagtcgtg agggttcaag
551   tccctctatc ccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OQ101230.1 nt Amana wanzhensis isolate WMZ1455 ch... 151264 bp Amana wanzhensis QL-PLN-00-007 563 bp View
OQ101231.1 nt Amana sp. MW-2023a isolate WMZ1458 ... 151273 bp Amana sp. MW-2023a QL-PLN-00-007 563 bp View
OQ101232.1 nt Amana wanzhensis isolate WMZ1460 ch... 151273 bp Amana wanzhensis QL-PLN-00-007 563 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.