Amplicon details

Amplicon:

621 bp
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101   gggcaatcct gagccaaatc ccttttttga aaaacaagtg gttctcaaac
151   tagaacccaa aggaaaagga taggtgcaga gactcaatgg aagctgttct
201   aacgaatcga ggtaattacg ttgtgttggt agtgaaactc cctctaaatt
251   agagaaagag gggctttgct ttatacatct aatacacaag tatagatact
301   gacatagcaa acgattaatc acagaaccca tatcataata taggttcttt
351   atttatttat tttttagaat gaaattagga atgattatga aatagaaaat
401   tcagaatttt tttagaatta ttgtgaatcc attccaatcg aatattgagt
451   aatcaaatcc ttcaattcat tgtttttgag atcttttaaa aagtggatta
501   atcggacgag gataaagaga gagtcccatt ctacatgtca atactgacaa
551   caatgaaatt tctagtaaaa ggaaaatccg tcgactttat aagtcgtgag
601   ggttcaagtc cctctatccc c 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP572359.1 nt Arundo donax chloroplast, complete ... 137153 bp Arundo donax QL-PLN-00-007 621 bp View
MF035971.1 nt Arundo donax isolate Teisher95 chlo... 137172 bp Arundo donax QL-PLN-00-007 621 bp View
MF035972.1 nt Arundo donax isolate Teisher96 chlo... 137172 bp Arundo donax QL-PLN-00-007 621 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.