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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 558 bp 
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151   ggcgaaaaag gataggtgca gagactcaat ggaagctgtt ctaacaaatg
201   gagttaactg cgttggtagc ggaatctttc gatcgaaact tcagaaagag
251   tgacggataa acgtatctat tgaatactat atcaaatgat taatgatgga
301   cctaatctgt atttttttat atgaaaaatg gaaaaattgg tgtgaattta
351   ttccacattg aagaaagaat caaataaaat attcattcat caaatcattc
401   actccatagt ctgatagatc ttttaaagaa ctgattaatc ggacgagaat
451   aaagatagag tcccattcta catgtcaata ccggcaacaa tgaaatttat
501   agtaagagga aaatccgtcg actttaaaaa tcgtgagggt tcaagtccct
551   ctatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP007418.1 nt Buddleja asiatica chloroplast, comp... 154163 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007375.1 nt Buddleja asiatica chloroplast, comp... 154172 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007410.1 nt Buddleja asiatica chloroplast, comp... 154209 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007414.1 nt Buddleja bhutanica chloroplast, com... 154177 bp Buddleja bhutanica QL-PLN-00-007 558 bp View
OP007415.1 nt Buddleja asiatica chloroplast, comp... 154170 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007416.1 nt Buddleja asiatica chloroplast, comp... 154206 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007417.1 nt Buddleja asiatica chloroplast, comp... 154211 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007420.1 nt Buddleja asiatica chloroplast, comp... 154164 bp Buddleja asiatica QL-PLN-00-007 558 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.