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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 574 bp 
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgttgt ctcaaaacaa aggttcagaa
151   ggcgaaaaaa ggataggtgc agagactcaa tggaagctgt tctaacaaat
201   ggagttaact gcgttggtag cggaatcttt cgatcgaaac ttcagaaaga
251   gtgacggata aacgtatcta ttgaatacta tatcaaatga ttaatgatgg
301   accgaatctg tattttttta tatgaaaaat ggaaaaattg gtgtgaattt
351   attccacatt gaagaaagaa tcaaataaaa tattcattca tcaaatcatt
401   cactccatag tctgatagat cttttaaaga actgattaat aaagaactga
451   ttaatcggac gagaataaag atagagtccc attctacatg tcaataccgg
501   caacaatgaa atttatagta agaggaaaat ccgtcgactt taaaaatcgt
551   gagggttcaa gtccctctat cccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP007366.1 nt Buddleja alternifolia chloroplast, ... 154216 bp Buddleja alternifolia QL-PLN-00-007 574 bp View
OP007367.1 nt Buddleja alternifolia chloroplast, ... 154202 bp Buddleja alternifolia QL-PLN-00-007 574 bp View
OP007390.1 nt Buddleja alternifolia chloroplast, ... 154280 bp Buddleja alternifolia QL-PLN-00-007 574 bp View
MN395662.1 nt Buddleja alternifolia chloroplast, ... 154357 bp Buddleja alternifolia QL-PLN-00-007 574 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.