Amplicon details

Amplicon:

235 bp
1     gctcctacaa atgccatcat tgcgataaag gaaaggccat cgttgaagat
51    gcctctgccg acagtggtcc caaagatgga cccccaccca cgaggagcat
101   cgtggaaaaa gaagacgttc caaccacgtc ttcaaagcaa gtggattgat
151   gtgatatcct gaatagatct tggacaagcg ttaggcctat ctggaatctc
201   cactgacgta agggatgacg cacaatccca ctatc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ007625.1 nt Cauliflower mosaic virus 35S promot... 485 bp Cauliflower mosaic virus QL-ELE-00-001 235 bp View
JN811691.1 nt Plant transformation vector pC1300-... 10779 bp Plant transformation vector pC1300-EGFP QL-ELE-00-001 235 bp View
AJ007625.1 nt Cauliflower mosaic virus 35S promot... 485 bp Cauliflower mosaic virus QL-ELE-00-005 235 bp View
JN811691.1 nt Plant transformation vector pC1300-... 10779 bp Plant transformation vector pC1300-EGFP QL-ELE-00-005 235 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.