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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 560 bp 
1     cgaaatcggt agacgctacg gacttaatta taattaaatt gagccttagt
51    gtgggaaacc tactaagtga taactttcaa attcagagaa accccggaat
101   taataaaaat gggcgatcct gatccaaatc ctgttttttc aaaacaaagg
151   ttcaaaaaac gaactaaagg ataggtgcag agactcaatg gaagctgttc
201   taacaaatgg agttgactgc gttgcgttgg tagaggaatc ctttctacgg
251   aaacttcaga aaggataaac gtatctatcg aatactatat caaatgatta
301   atgatggccc gaatccgtat ttttaatatg aaaaatagaa gaattggtgt
351   gaattgattc tatattgaag aaaaaatcga atattcattc atcaaatcat
401   tcactccata gtccgataga tcttttaaag aactgattaa tcggacgaga
451   ataaagatag agtcccattc tacatgtcaa tactggcaac aatgaaattt
501   atagtaagag gaaaatccgt cgactttaaa aatcgtgagg gttcaagtcc
551   ctctatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR822600.1 nt Phlomoides rotata chloroplast, comp... 151837 bp Phlomoides rotata QL-PLN-00-007 560 bp View
MZ150795.1 nt Phlomoides rotata chloroplast, comp... 151825 bp Phlomoides rotata QL-PLN-00-007 560 bp View
MW338732.1 nt Phlomoides rotata chloroplast, comp... 151829 bp Phlomoides rotata QL-PLN-00-007 560 bp View
ON815627.1 nt Phlomoides rotata isolate M106 vouc... 151877 bp Phlomoides rotata QL-PLN-00-007 560 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.