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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 539 bp 
1     cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51    acctactgag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101   gggcaatcct gagccaaatc ctgttttcgg aaaagggata ggtgcagaga
151   ctcgatggaa gctgttctaa cgaatgaagt tggtcgaaaa aaatctttct
201   attaaaactc cagaaaggat gaacctatat atgatatata ggtatacgta
251   ctgaaataaa atagaaaaga ttaatgaaat acgaatcctt tatttaactt
301   atacaaaaat tgaaaaattc ttctgaatcg attccatgtg gaagtaagga
351   tcgaatattc actgatcaaa tcagccactt tagagtatag tatgatagat
401   tttgtgaaga actaactaat tggacgagaa taaagataga gtcccattct
451   acatgtcaat accgacaaca atgaaattta tagtaagagg aaaatccgtc
501   gactttagca atcgtgaggg ttcaagtccc tctatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT982396.1 nt Sinopodophyllum hexandrum voucher S... 157247 bp Sinopodophyllum hexandrum QL-PLN-00-007 539 bp View
MW331536.1 nt Sinopodophyllum hexandrum chloropla... 157255 bp Sinopodophyllum hexandrum QL-PLN-00-007 539 bp View
KT445939.1 nt Sinopodophyllum hexandrum chloropla... 157203 bp Sinopodophyllum hexandrum QL-PLN-00-007 539 bp View
MG593048.1 nt Sinopodophyllum hexandrum chloropla... 157253 bp Sinopodophyllum hexandrum QL-PLN-00-007 539 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.