Amplicon details

Amplicon:

558 bp
1     cgaaatcggt agacgctacg gacttaattg gtttgagcct tagtatggaa
51    acctactaag tgagaacttt caaattcaga gaaaccctgg aataaaaaaa
101   cggataatcc tgagccaact cctgctttcc aaaagaaaga ataaatacag
151   gataggtgca gagactcaat ggaagctgtt ctaacaaagc ggagttgact
201   gtattgcgtt gttataagaa ttcttccgtc aaaactcaaa aaaggatgaa
251   gaataaacct atatgcatac gtacgtaaat actaaaaaaa aaaagaataa
301   tattgatgac aacccggata tttattttat gacaaagaag atatgaatca
351   atttcaaatt gaagaaaaaa ttaaatattc atttattatt attaaaagct
401   actcccaagt ctgatggatc ttttaaagaa ccgatccatc ggatgagaat
451   gaagatagag tcccattcta cgtgtcaatc ctgacaacaa tgaaatttat
501   agtaagagga aaatccgtcg actttataaa tcgtgagggt tcaagtccct
551   ctatcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW017634.1 nt Fagopyrum leptopodum chloroplast, c... 159337 bp Fagopyrum leptopodum QL-PLN-00-007 558 bp View
OK054489.1 nt Fagopyrum longistylum chloroplast, ... 159325 bp Fagopyrum longistylum QL-PLN-00-007 558 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.