Amplicon details

Amplicon:

566 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaagaaa
101   agtgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151   aacgaaaaaa aaaagaaaag gataggtgca gagactcaat ggaagctatt
201   ctaacaaatg gagttgactg cattggtaga ggaatctttc catcaaaact
251   gcagaaagga tgaaggataa acgtatctat tgaatactat atcaattaat
301   gatggcccaa atctgtatct gtatttttta atctgaaaag tggaagaatt
351   ggtgtgaatt gattccacat tgaagaaaga atcgaatatt aattcatcaa
401   atcattcact ccatagtccg acagatcttt taaagaactt attaaatcgg
451   gcgagaataa agatagagtc ccattctaca tgtcaatatt ggcaacaatg
501   aaatttatag taagaggaaa atccgtcgac ttttaaaatc gtgagggttc
551   aagtccctct atcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW238408.1 nt Mazus pumilus chloroplast, complete... 152855 bp Mazus pumilus QL-PLN-00-007 566 bp View
OQ628314.1 nt Mazus pumilus var. delavayi chlorop... 152847 bp Mazus pumilus var. delavayi QL-PLN-00-007 566 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.