Amplicon details

Amplicon:

564 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcaaaa
151   aacgaaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201   atggagttga ctgcgccggt agaggaatct ttccatggaa actttagaaa
251   ggatgaagga taaacgcatc tattgaatac tatatcaaat gattaatgtt
301   gacccgaatc tgttttttaa taggaaaatg aaaaaatgga aaaataggtg
351   ggaatttatt tcacgttgaa gaataaatcg aatattcatc aactcattca
401   ctccatagtc cgatagatct tttaaagaac ttattaatcg gacgagaata
451   aagatagagt cccgttctac atgctacatg tcaataccgg caacaatgaa
501   atttatagta agaggaaaat ccgtcgactt taaaaatcgt gagggttcaa
551   gtccctctat cccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT012421.1 nt Salvia yangii chloroplast, complete... 151473 bp Salvia yangii QL-PLN-00-007 564 bp View
MT537168.1 nt Salvia yangii chloroplast, complete... 151473 bp Salvia yangii QL-PLN-00-007 564 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.