Amplicon details

Amplicon:

558 bp
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaag ggataggtgc agagactcaa cggaagctgt tctaacaaat
201   ggaattgact gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251   ataaaaaacg tatatatacg tattgaatac tatatcaaat gattaatgac
301   gactcgactg aatctgtatt atttatatga aaacggaaga attggtgtga
351   atagattcca cattgaagaa agaatcgaat attcattgat taaatgattc
401   actccatagt ctgatagatc ttttcaagaa ttgattaatc ggacgagaat
451   aaagatagag tcccgttcta catgccaatg tcggcaacaa tgaaatttat
501   agtaagagga aaatccgtcg actttaaaaa tcgtgagggt tcaagtccct
551   ctatcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
HM536234.1 nt Glionnetia sericea isolate cA098 tR... 1685 bp Glionnetia sericea QL-PLN-00-007 558 bp View
HM536235.1 nt Glionnetia sericea isolate cA099 tR... 1713 bp Glionnetia sericea QL-PLN-00-007 558 bp View
KY378665.1 nt Glionnetia sericea chloroplast, par... 128877 bp Glionnetia sericea QL-PLN-00-007 558 bp View
HM536236.1 nt Glionnetia sericea isolate cA100 tR... 1162 bp Glionnetia sericea QL-PLN-00-007 558 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.