Amplicon details

Amplicon:

549 bp
1     cgaaatcggt agacgctacg gacttgattg aattgagcct tagtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aaaaaaaagg
101   gggcaatcct gagccaaatc tttattttga gaaaacaaaa actagaataa
151   aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa cgaatggagt
201   tgactacgtt gtgttggtag ccggaatctt tctatcgaaa tgaaagataa
251   ggatatacct aattcgtata catatttacc atatcaaacg attaatcatg
301   acccaaatcc attatatata tatgcaaaat ggggggagat ctattccaat
351   cgagaagaat cgaatattcg gtgatcaaat ctattctata cattccaggg
401   tttgatagat cttttgaaaa acagattaat cggaagagaa taaagagaga
451   gtcccattat acatgtcaat aacgacaaca atgaaattta tagtaaaagg
501   aaaatccgtc gactttagaa atcgtgaggg ttcaagtccc tctatcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
GQ382025.1 nt Babiana villosa tRNA-Leu (trnL) gen... 781 bp Babiana villosa QL-PLN-00-007 549 bp View
GQ381985.1 nt Babiana lineolata tRNA-Leu (trnL) g... 775 bp Babiana lineolata QL-PLN-00-007 549 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.