Amplicon details

Amplicon:

546 bp
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acttactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101   aaagggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151   aacgaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201   tggagttgat tgcgctgata gaggaatgaa acttcagaaa ggataaatgt
251   atctattgaa tactatatca aaatcaaatg attgattaat gatggcccaa
301   atctagatct gtatttttga atacgaaaag tggaagaatt ggtgtgaatt
351   tcttccataa agaatattca ttcatcaaat cattcactcc atagtccgat
401   agatcttttt taaaagatct gattaatcgg acgagaataa agatagagtc
451   ccattctaca tgtcaatacc ggcaacaatg aaatttatag taaaaggaaa
501   atccgtcgac ttttaaaatc gtgagggttc aagtccctct atcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU828207.1 nt Aureolaria pectinata isolate 1 tRNA... 1628 bp Aureolaria pectinata QL-PLN-00-007 546 bp View
EU828208.1 nt Aureolaria pedicularia isolate 3 tR... 1571 bp Aureolaria pedicularia QL-PLN-00-007 546 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.