Amplicon details

Amplicon:

551 bp
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101   aaagggcaat cctgagccaa atcctgtttt cttaaaacaa aagttcagaa
151   aacgaaacga aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa
201   caaatggagt tggttgcgat gatagaggaa tgaaacttca gaaaggatga
251   aggataaacg tatctattga atactctatc aaaatcatga ttaatgatgg
301   cccaaatctc tatctgtatt tttgaatacg aaaagtggaa gaattggtgt
351   gaatttcttc cctaaagaat attcattcat caaatcattc actccatagt
401   ccgatagatc ttttttaaaa gatctgatta atcggacgag aataaagata
451   gagtcccatt ctacatgtca atatgggcaa caatgaaatt tttagtaaaa
501   ggaaaatccg tcgacttttc aaatcgtgag ggttcaagtc cctctatccc
551   c 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU828153.1 nt Agalinis filicaulis isolate 1AL tRN... 1660 bp Agalinis filicaulis QL-PLN-00-007 551 bp View
EU828154.1 nt Agalinis filicaulis isolate 5FL tRN... 1010 bp Agalinis filicaulis QL-PLN-00-007 551 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.