Amplicon details

Amplicon:

561 bp
1     cgaaatcggt agacgctacg gacttgatcg aattgagcct tggtatggaa
51    acctaccaag tgatagcttc caaattcagg gaaccccggg atattttgaa
101   tgggtaatcc tgagccaaat ccggttcata gagacaatgg tttgtttctt
151   tcctaggata ggaaggggat aggtgcagag actcaatgga agctattcta
201   acgaatgaat ttcatttggg gtccaatact ctatttatag aacgctttat
251   ttacacctcg aaagtgggaa tgttgtataa aataaaacaa cactcgcgat
301   cagaacttga atcgtttcaa gcattttatt tgtaagagaa atgccagatt
351   tgagttgaag taatgatttg acattaagta atccaattat gaactttctc
401   tactctagat agggagttga atcagttttt ggaagaaatt attggacgag
451   gataaagata gagtccaatt ctacgtgtca atgtcaacaa caatgcaaat
501   tgcagtagga ggaaaatccg ttggctttat agaccgtgag ggttcaagtc
551   cctctatccc c 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF395434.1 nt Tsuga diversifolia voucher YU Havil... 1470 bp Tsuga diversifolia QL-PLN-00-007 561 bp View
EF395436.1 nt Tsuga diversifolia voucher A 1837-7... 1470 bp Tsuga diversifolia QL-PLN-00-007 561 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.