Amplicon details

Amplicon:

572 bp
1     cgaaatcggt agacgctacg gacttgatcg aattgagcct tggtatggaa
51    acctaccaag tgatagcttc caaattcagg gaaccccggg atattttgaa
101   tgggtaatcc tgagccaaat ccggttcata gagacaatgg tttctttcct
151   aggataggaa ggggataggt gcagagactc aatggaagct attctaacga
201   atgaatttca tttggggtcc aatactctat ttatagaacg ctttatttac
251   acctcgaaaa tttacacctc gaaagtggga atgttgtata aaataaaaca
301   acactcgcga tcagaatttg aatcgtttca agcattttat ttgtaagata
351   aatgccagat ttgagttgaa gtaatgattt gacattaagt aatccaatta
401   tgaactttct ctactctaga tagggagttg aatcagtttt tggaagaaat
451   tattggacga ggataaagat agagtccaat tctacgtgtc aatgtcaaca
501   acaatgcaaa ttgcagtagg aggaaaatcc gttggcttta tagaccgtga
551   gggttcaagt ccctctatcc cc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF395426.1 nt Tsuga chinensis voucher YU Havill 0... 1474 bp Tsuga chinensis QL-PLN-00-007 572 bp View
EF395428.1 nt Tsuga chinensis voucher A 100-94 tR... 1474 bp Tsuga chinensis QL-PLN-00-007 572 bp View
EF395441.1 nt Tsuga forrestii voucher YU Havill 0... 1474 bp Tsuga forrestii QL-PLN-00-007 572 bp View
EF395443.1 nt Tsuga forrestii voucher USNA 70161 ... 1473 bp Tsuga forrestii QL-PLN-00-007 572 bp View
EF395424.1 nt Tsuga chinensis voucher YU Havill 0... 1474 bp Tsuga chinensis QL-PLN-00-007 572 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.