Amplicon details

Amplicon:

553 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51    acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101   gggcaatcct gagccaaatc ctgttttccg aaaaccagaa aacgctaata
151   aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa caaaaacgga
201   gttgactatg ttacgatgtt aaacgaatcc ttccatcaaa actccagaac
251   cagaaaggat gaaggataaa cctatataca taggtactga aatattatat
301   caaatgatta atgatggctc gaatctctat ttttttatat gaaaaatgaa
351   agaattgttg taaatcgatt ccaatattca ttgatcaaat cattcactcc
401   atagtccgat agatcatttg aagaacggat taatcggacg agaataaaga
451   gagagtccca ttctacatgt caatatcgac agcaatgaaa tttatagtaa
501   gaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag tccctctatc
551   ccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB235050.1 nt Tetrastigma cf. delavayi 7443 chlor... 989 bp Tetrastigma cf. delavayi 7443 QL-PLN-00-007 553 bp View
AB235071.1 nt Tetrastigma sp. 7465 chloroplast DN... 992 bp Tetrastigma sp. 7465 QL-PLN-00-007 553 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.