JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

552 bp

1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaag ggataggtgc agagactcaa tggaagctgt tctaacaaat
201   ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251   ataaaacgta tacgtattga atactatatc aaatgattaa tgacgactcg
301   actgaatctg ttttttttat atgaaaatgg aagaattggt gtgaatagat
351   tccacattga agaaagaatc gaatattcat tgattaaatg attcactcca
401   tagtctgata gatcttttca agaattgatt aatcggacga gaataaagat
451   agagtcccgt tctacatgtc aatgtcggca acaatgaaat ttatagtaat
501   aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551   cc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
AJ620153.1	nt	Peponidium horridum chloroplast trn...	1729 bp	Peponidium horridum	QL-PLN-00-007	552 bp	View
EF205632.1	nt	Peponidium comorense trnT-trnL inte...	1702 bp	Peponidium comorense	QL-PLN-00-007	552 bp	View
FN386318.1	nt	Canthium fadenii trnT-trnL IGS(part...	1664 bp	Bullockia fadenii	QL-PLN-00-007	552 bp	View
FN386327.1	nt	Peponidium comorense trnT-trnL IGS(...	1679 bp	Peponidium comorense	QL-PLN-00-007	552 bp	View
FN386329.1	nt	Peponidium horridum trnT-trnL IGS(p...	1658 bp	Peponidium horridum	QL-PLN-00-007	552 bp	View
FN386336.1	nt	Peponidium sp. 4 Davis 1133 trnT-tr...	1652 bp	Peponidium sp. 4 Davis 1133	QL-PLN-00-007	552 bp	View
FN386328.1	nt	Peponidium crassifolium trnT-trnL I...	1655 bp	Peponidium crassifolium	QL-PLN-00-007	552 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.