JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

552 bp

1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaag ggataggtgc agagactcaa tggaagctgt tctaacaaat
201   ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251   ataaaacgta tacgtattga atactatatc aaatgattaa tgacgactcg
301   actgaatctg tattttttat atgaaaatgg aagaattggt gtgaatagat
351   tccacattga agaaagaatc gaatattcat tgattaaatg attcactcca
401   tagtctgata gatcttttca agaattgatt aatcggacga gaataaagat
451   agagtcccgt tctacatgtc aatgtcggca acaatgaaat ttatagtaat
501   aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551   cc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
JQ958225.1	nt	Pyrostria bibracteata voucher Burro...	1713 bp	Pyrostria bibracteata	QL-PLN-00-007	552 bp	View
KF488262.1	nt	Bullockia mombazensis voucher Verst...	1694 bp	Bullockia mombazensis	QL-PLN-00-007	552 bp	View
KF488264.1	nt	Bullockia setiflora voucher Verstra...	1694 bp	Bullockia setiflora	QL-PLN-00-007	552 bp	View
FN386338.1	nt	Peponidium venulosum trnT-trnL IGS(...	1652 bp	Peponidium venulosum	QL-PLN-00-007	552 bp	View
FN386354.1	nt	Pyrostria sp LN 1207 trnT-trnL IGS(...	1673 bp	Pyrostria sp. LN 1207	QL-PLN-00-007	552 bp	View
JQ958224.1	nt	Peponidium sp. De Block et al 2487 ...	1710 bp	Peponidium sp. De Block et al 2487	QL-PLN-00-007	552 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.